{"id":2452,"date":"2022-05-10T14:47:26","date_gmt":"2022-05-10T14:47:26","guid":{"rendered":"https:\/\/medgift.hevs.ch\/wordpress\/?p=2452"},"modified":"2022-05-10T14:47:27","modified_gmt":"2022-05-10T14:47:27","slug":"article-published-in-bioinformatics-with-shared-imagej-plugin","status":"publish","type":"post","link":"https:\/\/medgift.hevs.ch\/wordpress\/article-published-in-bioinformatics-with-shared-imagej-plugin\/","title":{"rendered":"Article published in Bioinformatics with shared ImageJ plugin"},"content":{"rendered":"\n<p>Our work on automatic template detection for microscopy images &#8220;<a href=\"https:\/\/academic.oup.com\/bioinformatics\/advance-article\/doi\/10.1093\/bioinformatics\/btac270\/6569818?login=true\">Steer\u2019n\u2019Detect: Fast 2D Template Detection with Accurate Orientation Estimation<\/a>&#8220;, by V. Uhlmann, Z. P\u00fcsp\u00f6ki, A. Depeursinge, M. Unser, D. Sage and J. Fageot., has been accepted for publication in the <a href=\"https:\/\/academic.oup.com\/bioinformatics\">Bioiformatics<\/a> jounal. <\/p>\n\n\n\n<p>In this work, we introduce <em><a href=\"https:\/\/github.com\/Biomedical-Imaging-Group\/Steer-n-Detect\">Steer&#8217;n&#8217;Detect<\/a><\/em>,  an ImageJ plugin to detect patterns of interest at any orientation with high accuracy from a single template in 2D images.<\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"687\" height=\"332\" src=\"https:\/\/medgift.hevs.ch\/wordpress\/wp-content\/uploads\/2022\/05\/Screenshot-from-2022-05-10-16-44-39-1.png\" alt=\"\" class=\"wp-image-2464\" srcset=\"https:\/\/medgift.hevs.ch\/wordpress\/wp-content\/uploads\/2022\/05\/Screenshot-from-2022-05-10-16-44-39-1.png 687w, https:\/\/medgift.hevs.ch\/wordpress\/wp-content\/uploads\/2022\/05\/Screenshot-from-2022-05-10-16-44-39-1-300x145.png 300w\" sizes=\"auto, (max-width: 687px) 100vw, 687px\" \/><figcaption>Detection of rod-shaped bacteria with Steer\u2019n\u2019Detect (synthetic image degraded by self-similar Gaussian random field background noise).<\/figcaption><\/figure>\n\n\n\n<figure class=\"wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"672\" height=\"353\" src=\"https:\/\/medgift.hevs.ch\/wordpress\/wp-content\/uploads\/2022\/05\/Screenshot-from-2022-05-10-16-44-45.png\" alt=\"\" class=\"wp-image-2463\" srcset=\"https:\/\/medgift.hevs.ch\/wordpress\/wp-content\/uploads\/2022\/05\/Screenshot-from-2022-05-10-16-44-45.png 672w, https:\/\/medgift.hevs.ch\/wordpress\/wp-content\/uploads\/2022\/05\/Screenshot-from-2022-05-10-16-44-45-300x158.png 300w\" sizes=\"auto, (max-width: 672px) 100vw, 672px\" \/><figcaption>Detection of spermatozoan axoneme with Steer\u2019n\u2019Detect (transmission electron microscopy image) (Reused from <a rel=\"noreferrer noopener\" href=\"http:\/\/www.cellimagelibrary.org\/images\/35970\" target=\"_blank\">http:\/\/www.cellimagelibrary.org\/images\/35970<\/a>). Top left: image crop used as template; bottom left: resulting detector; right: detection results<\/figcaption><\/figure>\n","protected":false},"excerpt":{"rendered":"<p>Our work on automatic template detection for microscopy images &#8220;Steer\u2019n\u2019Detect: Fast 2D Template Detection with Accurate Orientation Estimation&#8220;, by V. Uhlmann, Z. P\u00fcsp\u00f6ki, A. Depeursinge, M. Unser, D. Sage and J. Fageot., has been accepted for publication in the Bioiformatics jounal. In this work, we introduce Steer&#8217;n&#8217;Detect, an ImageJ plugin to detect patterns of interest &hellip; <\/p>\n<p class=\"link-more\"><a href=\"https:\/\/medgift.hevs.ch\/wordpress\/article-published-in-bioinformatics-with-shared-imagej-plugin\/\" class=\"more-link\">Continue reading<span class=\"screen-reader-text\"> &#8220;Article published in Bioinformatics with shared ImageJ plugin&#8221;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_jetpack_memberships_contains_paid_content":false,"footnotes":""},"categories":[1],"tags":[],"class_list":["post-2452","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"jetpack_featured_media_url":"","jetpack_shortlink":"https:\/\/wp.me\/p8AP2d-Dy","jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/medgift.hevs.ch\/wordpress\/wp-json\/wp\/v2\/posts\/2452","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/medgift.hevs.ch\/wordpress\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/medgift.hevs.ch\/wordpress\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/medgift.hevs.ch\/wordpress\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/medgift.hevs.ch\/wordpress\/wp-json\/wp\/v2\/comments?post=2452"}],"version-history":[{"count":2,"href":"https:\/\/medgift.hevs.ch\/wordpress\/wp-json\/wp\/v2\/posts\/2452\/revisions"}],"predecessor-version":[{"id":2465,"href":"https:\/\/medgift.hevs.ch\/wordpress\/wp-json\/wp\/v2\/posts\/2452\/revisions\/2465"}],"wp:attachment":[{"href":"https:\/\/medgift.hevs.ch\/wordpress\/wp-json\/wp\/v2\/media?parent=2452"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/medgift.hevs.ch\/wordpress\/wp-json\/wp\/v2\/categories?post=2452"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/medgift.hevs.ch\/wordpress\/wp-json\/wp\/v2\/tags?post=2452"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}